tmRDB -- A tmRNA database
What you can do:
Search for aligned, annotated and phylogenetically ordered sequences related to structure and function of tmRNA.
Highlights:
- In the 2003 release of tmRDB, 186 new entries from 10 bacterial groups for a total of 274 tmRNA sequences have been added.
- Lists of the tmRNAs and the corresponding tmRNA-encoded tag-peptides are presented in alphabetical and phylogenetic order.
- The tmRNA sequences are aligned manually, assisted by computational tools, to determine base pairs supported by comparative sequence analysis.
- The tmRNA alignment, available in a variety of formats, provides the basis for the secondary and tertiary structure of each tmRNA molecule.
- 3D models of the tmRNAs and their associated proteins in PDB format give evidence for the recent progress that has been made in the understanding of tmRNP structure and function.
Keywords:
- tmRNA
- tmRNA data warehouse
- tmRNA secondary structures
- tmRNA tertiary structures
- tmRNP
- tRNA domains
- tmRNA phylogeny
Literature & Tutorials:
This record last updated: 04-17-2014