ProDom and ProDom-CG -- Tools for protein domain analysis and whole genome comparisons
What you can do:
Search and analyze protein domain families.
Highlights:
- ProDom is a comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases.
- ProDom is built based on recursive PSI-BLAST homology searches.
- Inside each family, sequences are aligned using the Multalin program.
- ProDom-CG is built from ProDom as an extraction of sequences derived from complete genomes.
- Families found in ProDom-CG are thus a subset of ProDom families.
- ProDom (release 2004) contains 237,888 domain families containing two or more individual domains.
Keywords:
- protein domains
- protein families
- protein sequence alignments
- protein domain analysis tool
- protein domain portal
Literature & Tutorials:
This record last updated: 05-04-2006