PA-GOSUB -- a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization
What you can do:
Search for sequences, predicted GO molecular functions and predicted subcellular localizations of more than 107,000 proteins from 10 model organisms.
Highlights:
- This is a publicly available, web-based, searchable and downloadable database that contains the sequences, predicted GO molecular functions and predicted subcellular localizations of more than 107 000 proteins from 10 model organisms (and growing), covering the major kingdoms and phyla for which annotated proteomes exist.
- A user can browse the pre-computed PA-GOSUB annotations on a per-organism and per-protein basis using annotation-based and text-based filters.
- A user can perform BLAST searches against the PA-GOSUB database and use the annotations from the homologs as simple predictors for the new sequences.
- The whole of PA-GOSUB can be downloaded in either FASTA or comma-separated values (CSV) formats.
Keywords:
- proteomic data warehouse
- proteome annotations
- functional annotations
- protein localizations
- subcellular localizations
- Plasmodium falciparum proteome
- human proteome
- mouse proteome
- Drosophila melanogaster proteome
- Caenorhabditis elegans proteome
- Methanobacterium thermoautotrophicum proteome
- Methanococcus jannaschii proteome
- Saccharomyces cerevisiae proteome
- gram-negative bacterial proteomes
- gram-positive bacteria proteomes
- yeast proteomes
- bacterial proteomes
Literature & Tutorials:
PubMed Link: PA-GOSUB
This record last updated: 05-05-2005