AMPDB -- the Arabidopsis Mitochondrial Protein Database

What you can do:
Search for information on the predicted and experimentally confirmed protein complement of mitochondria from the model plant Arabidopsis thaliana.
  • The database was formed using the total non-redundant nuclear and organelle encoded sets of protein sequences and allows relational searching of published proteomic analyses of Arabidopsis mitochondrial samples, a set of predictions from six independent subcellular-targeting prediction programs, and orthology predictions based on pairwise comparison of the Arabidopsis protein set with known yeast and human mitochondrial proteins and with the proteome of Rickettsia.
  • A variety of precomputed physicalx96biochemical parameters are also searchable as well as a more detailed breakdown of mass spectral data produced from our proteomic analysis of Arabidopsis mitochondria.
  • It contains hyperlinks to other Arabidopsis genomic resources (MIPS, TIGR and TAIR), which provide rapid access to changing gene models as well as hyperlinks to T-DNA insertion resources, Massively Parallel Signature Sequencing (MPSS) and Genome Tiling Array data and a variety of other Arabidopsis online resources.
  • It also incorporates basic analysis tools built into the query structure such as a BLAST facility and tools for protein sequence alignments for convenient analysis of queried results.
  • mitochondrial proteins
  • mitochondrial proteome
  • Arabidopsis thaliana
  • Arabidopsis mitochondrion
  • mitochondrial proteins
  • protein localizations
  • mitochondria
  • mitochondrion
  • Mitochondrial Inparanoid Orthologs
Literature & Tutorials:
PubMed Link: AMPDB
This record last updated: 05-05-2005
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