The Legume Information System (LIS) -- an integrated information resource for comparative legume biology
What you can do:
Search for integrated genetic and molecular data from multiple legume species.
Highlights:
- LIS is a comparative legume resource that integrates genetic and molecular data from multiple legume species enabling cross-species genomic and transcript comparisons.
- The LIS virtual plant interface allows simplified and intuitive navigation of transcript data from Medicago truncatula, Lotus japonicus, Glycine max and Arabidopsis thaliana.
- Transcript libraries are represented as images of plant organs in different developmental stages, which are selected to query the analyzed and annotated data.
- Complex queries can be accomplished by adding modifiers, keywords and sequence names.
- The LIS also contains annotated genomic data featuring transcript alignments to validate gene predictions as well as motif and similarity analyses.
- The genomic browser supports comparative analysis via novel dynamic functional annotation comparisons.
- CMap has been incorporated to support comparative analyses of community linkage and physical map data.
- LIS is being expanded to incorporate gene expression and biochemical pathways which will be seamlessly integrated forming a knowledge discovery framework.
Keywords:
- legume data warehouse
- legume genomic data warehouse
- legume genomes
- Medicago truncatula transcripts
- Lotus japonicus transcripts
- Glycine max transcripts
- Arabidopsis thaliana transcripts
- Transcript libraries
- legume cDNA libraries
- transcript alignments
- gene mapping
- physical maps
- plant genomes
- comparative genomics
- global gene expression
- biochemical pathways
Literature & Tutorials:
PubMed Link: LIS
This record last updated: 05-05-2005