MATCH -- a tool for searching transcription factor binding sites in DNA sequences
What you can do:
Search potential binding sites for transcription factors (TF binding sites) nucleotide sequences.
Highlights:
- MatchTM is a weight matrix-based tool for searching putative transcription factor binding sites in DNA sequences.
- MatchTM is closely interconnected and distributed together with the TRANSFACxae database.
- In particular, MatchTM uses the matrix library collected in TRANSFACxae and therefore provides the possibility to search for a great variety of different transcription factor binding sites.
- Several sets of optimized matrix cut-off values are built in the system to provide a variety of search modes of different stringency.
- The user may construct and save his/her specific user profiles which are selected subsets of matrices including default or user-defined cut-off values.
- Furthermore a number of tissue-specific profiles are provided that were compiled by the TRANSFACxae team.
Keywords:
- transcription factor binding site analysis tool
- transcription factor binding site prediction tool
- DNA-binding sites prediction tool
- promoter analysis tool
- transcription factor binding sites
- transcription factor binding site visualization tool
- transcription factors
- cis-elements
- cis-elements prediction tool
- regulatory element prediction tool
- promoter element prediction tool
Literature & Tutorials:
This record last updated: 06-14-2005