Gibbs Recursive Sampler -- finding transcription factor binding sites

URL:

http://bayesweb.wadsworth.org/gibbs/gibbs.html

What you can do:

Locate multiple transcription factor binding sites for multiple transcription factors simultaneously in unaligned DNA sequences that may be heterogeneous in DNA composition.

Highlights:

The Gibbs Motif Sampler will allow you to identify motifs, conserved regions, in DNA or protein sequences.
The Gibbs Recursive Sampler, which has been developed specifically for locating multiple transcription factor binding sites for multiple transcription factors simultaneously in unaligned DNA sequences that may be heterogeneous in DNA composition.

Keywords:

transcription factor binding site analysis tool
DNA-binding sites prediction tool
promoter analysis tool
transcription starting site prediction tool
TSS prediction tool
Transcription Initiation Site prediction tool
TSS positions
transcription factor binding sites
transcription factor binding site visualization tool
transcription factors
cis-elements
cis-elements prediction tool
regulatory element prediction tool
promoter element prediction tool
transcription starting site prediction tool

Literature & Tutorials:

PubMed Link: Gibbs Recursive Sampler -- finding transcription factor binding sites

This record last updated: 06-14-2005

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