Target Explorer -- an automated tool for the identification of new target genes for a specified set of transcription factors

What you can do:
Predict clusters of binding sites for transcription factors in the context information taken from genome annotations.
Highlights:
  • Target Explorer automates the entire process from the creation of a customized library of binding sites for known transcription factors through the prediction and annotation of putative target genes that are potentially regulated by these factors.
  • It was specifically designed for the well-annotated Drosophila melanogaster genome, but most options can be used for sequences from other genomes as well.
  • Target Explorer is a complex tool with user-friendly self-explanatory Web-interface that allows to user: create customized library of TF binding site matrices based on user defined sets of training sequences;
  • search for new clusters of binding sites for specified set of TFs; extract annotation for potential target genes.
Keywords:
  • transcription factor binding site analysis tool
  • DNA-binding sites prediction tool
  • promoter analysis tool
  • transcription factor binding sites
  • transcription factor binding site visualization tool
  • transcription factors
  • cis-elements
  • cis-elements prediction tool
  • regulatory element prediction tool
  • promoter element prediction tool
  • Drosophila melanogaster transcription factor binding sites
  • fruitfly transcription factor binding sites
This record last updated: 06-14-2005
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