GlimmerM, Exonomy and Unveil -- three ab initio eukaryotic genefinders
What you can do:
Predict genes in DNA sequences with different software tools.
Highlights:
- Three programs for ab initio gene prediction in eukaryotes: Exonomy, Unveil and GlimmerM.
- Exonomy is a 23-state Generalized Hidden Markov Model (GHMM).
- Unveil is a 283-state standard Hidden Markov Model (HMM)
- GlimmerM is a previously-described genefinder which utilizes decision trees and Interpolated Markov Models (IMMs).
- All three are readily re-trainable for new organisms and have been found to perform well compared to other genefinders.
Keywords:
- gene prediction tools
- gene discovery tools
- gene identification tools
- open reading frame analysis tools
- eukaryotic gene prediction tools
- eukaryotic genes
Literature & Tutorials:
This record last updated: 06-15-2005