Identification of patterns in biological sequences at the ALGGEN server -- PROMO and MALGEN
What you can do:
Predict of transcription factor binding sites or visualize sequence correspondences among long DNA sequences.
Highlights:
- PROMO is a virtual laboratory for the identification of putative transcription factor binding sites (TFBS) in DNA sequences from a species or groups of species of interest. TFBS defined in the TRANSFAC database are used to construct specific binding site weight matrices for TFBS prediction.
- MALGEN is a tool that pictures a graphic showing the skeleton of a multi-alignment. It is based on an algorithm that compares two genomes whose performance depends mainly on the first genome. For this reason the shortest sequence should be submitted before.
Keywords:
- transcription factor binding site analysis tool
- DNA-binding sites prediction tool
- promoter analysis tool
- transcription factor binding sites
- transcription factor binding site visualization tool
- transcription factors
- cis-elements
- cis-elements prediction tool
- regulatory element prediction tool
- promoter element prediction tool
- DNA sequence analysis tool
- genomic sequence analysis tool
- genome alignment tool
- whole-genome alignment tool
- sequence alignment tool
- multiple sequence alignment tool
Literature & Tutorials:
This record last updated: 06-15-2005