Cluster-Buster -- finding dense clusters of motifs in DNA sequences
What you can do:
Find clusters of pre-specified motifs in nucleotide sequences.
Highlights:
- The main application is detection of sequences that regulate gene transcription, such as enhancers and silencers, but other types of biological regulation may be mediated by motif clusters too.
- Cluster-Buster may be used via our web server, or downloaded for use on your local computer.
- A downloadable program Cluster-Trainer is also provided for estimating optimal motif weights and gap parameters for Cluster-Buster.
Keywords:
- DNA motifs
- DNA motif discovery tool
- nucleotide motifs
- nucleotide motif discovery tool
- transcription factor binding site prediction tool
- DNA-binding sites prediction tool
- promoter analysis tool
- transcription factor binding sites
- transcription factors
- cis-elements
- cis-elements prediction tool
- regulatory element prediction tool
- promoter element prediction tool
Literature & Tutorials:
This record last updated: 06-16-2005