ESTAnnotator -- a tool for high throughput EST annotation
What you can do:
Perform high throughput annotation of expressed sequence tags (ESTs).
Highlights:
- ESTAnnotator is a tool for the high throughput annotation of expressed sequence tags (ESTs) by automatically running a collection of bioinformatics applications.
- In the first step, a quality check is performed and repeats, vector parts and low quality sequences are masked.
- Then successive steps of database searching and EST clustering are performed. Already known transcripts present within mRNA and genomic DNA reference databases are identified.
- Subsequently, tools for the clustering of anonymous ESTs, and for further database searches at the protein level, are applied.
- Finally, the outputs of each individual tool are gathered and the relevant results presented in a descriptive summary.
Keywords:
- high throughput EST annotation tool
- high throughput expressed sequence tags annotation tool
- high throughput sequence analysis tool
- high throughput gene expression analysis tool
- protein annotation tool
- DNA annotation tool
- genome annotation tool
- gene ontology tool
Literature & Tutorials:
This record last updated: 06-16-2005