Dcode.org anthology of comparative genomic tools
What you can do:
Demarcate functional regions in genomic DNA sequences using a list of tools.
Highlights:
- This Web site provides several analytical and visualization tools for the analysis of arbitrary sequences and whole genomes.
- These tools include two alignment tools, zPicture and Mulan; a phylogenetic shadowing tool, eShadow for identifying lineage- and species-specific functional elements; two evolutionary conserved transcription factor analysis tools, rVista and multiTF; a tool for extracting cis-regulatory modules governing the expression of co-regulated genes, Creme 2.0; and a dynamic portal to multiple vertebrate and invertebrate genome alignments, the ECR Browser.
Keywords:
- comparative genomic tools
- genome alignment tool
- pairwise sequence alignment tool
- multiple sequence alignment tool
- genome analysis tool
- phylogenetic tools
- Phylogenetic shadowing tool
- conserved transcription factor binding sites prediction tool
- DNA-binding sites prediction tool
- human cis-regulatory elements prediction tool
- human cis-elements prediction tool
- vertebrate regulatory elements prediction tool
- vertebrate promoter analysis tool
- vertebrate promoter elements analysis tool
- Evolutionary Conserved Regions prediction tool
- whole-genome alignment tool
- synonymous regulatory elements prediction tool
Literature & Tutorials:
PubMed Link: Dcode.org anthology of comparative genomic tools
This record last updated: 08-25-2005