CX, DPX and PRIDE -- WWW servers for the analysis and comparison of protein 3D structures
What you can do:
Analyze protein 3D structures submitted by the users as the Protein Data Bank (PDB) files.
Highlights:
- The servers are dedicated to the analysis of protein 3D structures submitted by the users as the Protein Data Bank (PDB) files.
- CX computes an atomic protrusion index that makes it possible to highlight the protruding atoms within a protein 3D structure.
- DPX calculates a depth index for the buried atoms and makes it possible to analyze the distribution of buried residues.
- CX and DPX return PDB files containing the calculated indices that can then be visualized using standard programs, such as Swiss-PDBviewer and Rasmol.
- PRIDE compares 3D structures using a fast algorithm based on the distribution of inter-atomic distances.
- The options include pairwise as well as multiple comparisons, and fold recognition based on searching the CATH fold database.
Keywords:
- protein structure analysis tool
- protein tertiary structure analysis tool
- protein 3D structure analysis tool
- protein folds
- protein folding
Literature & Tutorials:
This record last updated: 11-08-2005