PatMatch -- a program for finding patterns in peptide and nucleotide sequences

What you can do:
Search for short nucleotide or peptide sequences such as cis-elements in nucleotide sequences or small domains and motifs in protein sequences.
  • The program can be used to find matches to a user-specified sequence pattern that can be described using ambiguous sequence codes and a powerful and flexible pattern syntax based on regular expressions.
  • A recent upgrade has improved performance and now supports both mismatches and wildcards in a single pattern.
  • The stand-alone version of the software can be adapted for use with any sequence dataset and is available for download at The Arabidopsis Information Resource (TAIR) at
  • The PatMatch server is available on the Web.
  • protein motifs
  • amino acid motifs
  • protein sequence pattern search tool
  • DNA sequence pattern search tool
  • nucleotide sequence patterns
  • protein motif patterns
  • protein motif pattern analysis tool
  • protein domain search tool
This record last updated: 11-08-2005
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