BABELOMICS -- advanced functional profiling of transcriptomics, proteomics and genomics experiments
What you can do:
Suite of web tools for the functional profiling of genome scale experiments.
Highlights:
- Babelomics includes different flavors of conventional functional enrichment methods as well as more advanced gene set analysis methods that makes it a unique tool among the similar resources available.
- In addition to the well-known functional definitions (GO, KEGG), Babelomics includes new ones such as Biocarta pathways or text mining-derived functional terms.
- Regulatory modules implemented include transcriptional control (Transfac, CisRed) and other levels of regulation such as miRNA-mediated interference.
- Moreover, Babelomics allows for sub-selection of terms in order to test more focused hypothesis.
- Also gene annotation correspondence tables can be imported, which allows testing with user-defined functional modules.
- Finally, a tool for the 'de novo' functional annotation of sequences has been included in the system. This allows using yet unannotated organisms in the program.
- Babelomics has been extensively re-engineered and now it includes the use of web services and Web 2.0 technology features, a new user interface with persistent sessions and a new extended database of gene identifiers.
Keywords:
- genome annotation tool
- gene annotation tool
- high-throughput gene expression data analysis tool
- gene functional analysis tool
- transcription factors
- transcription factor binding sites
- cis-regulatory elements
- transcription factor binding site prediction tool
- cis-regulatory elements prediction tool
- promoter elements
- promoter analysis tool
- chromosomal positions
- genetic data mining tool
- microarray data analysis tool
Literature & Tutorials:
PubMed Link: BABELOMICS -- a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments
2006 Update: BABELOMICS -- a systems biology perspective in the functional annotation of genome-scale experiments
2008 Update: Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
2006 Update: BABELOMICS -- a systems biology perspective in the functional annotation of genome-scale experiments
2008 Update: Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
This record last updated: 08-02-2006