dnaMATE -- a consensus melting temperature prediction server for short DNA sequences

URL:
http://melolab.org/dnaMATE/
What you can do:
Calculate a consensus melting temperature (Tm) for any given short DNA sequence (16-30 nts).
Highlights:
  • This is the first web server that has been implemented to perform a large-scale calculation of melting temperatures in real time (up to 5000 DNA sequences can be submitted in a single run).
  • The server calculates a consensus melting temperature value using the nearest-neighbor model based on three independent thermodynamic data tables.
  • The expected accuracy of calculations carried out by this server in the range of 50-600 mM monovalent salt concentration is that 89% of the melting temperature predictions will have an error or deviation of <5 degrees C from experimental data.
  • Beside the free Web access, the standalone executable versions of this software for LINUX, Macintosh and Windows platforms are also freely available at the same web site.
Keywords:
  • melting temperature calculation tool
  • oligo DNA melting temperature
Literature & Tutorials:
PubMed Link: dnaMATE -- a consensus melting temperature prediction server for short DNA sequences
This record last updated: 04-17-2014
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