MPromDb -- an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data
What you can do:
Search for annotated information on mammalian promoters.
Highlights:
- MPromDb is a novel database that integrates gene promoters with experimentally supported annotation of transcription start sites, cis-regulatory elements, CpG islands and chromatin immunoprecipitation microarray (ChIP-chip) experimental results with intuitively designed presentation.
- Release 1.0 (2006) of MPromDb currently contains 36,407 promoters and first exons (19,170 from human, 15,953 from mouse and 1284 from rat), 3739 transcription factor (TF)-binding sites (2027 from human, 1181 mouse and 531 rat) and 224 TFs with links to PubMed and GenBank references.
- Target promoters of TFs that have been identified by ChIP-chip assay are integrated into the database.
- MPromDb serves as a portal for genome-wide promoter analysis of data generated by ChIP-chip experimental studies.
Keywords:
- eukaryotes transcription factors
- mammalian transcription factor binding sites
- eukaryotes transcription factor binding sites
- TF
- eukaryotic promoters
- mammalian promoters
- mammalian promoter elements
- mammalian DNA-binding sites
- mammalian transcription start sites
- mammalian TSS
- mammalian CpG islands
- transcription factor binding sites
- cis-elements
- cis-regulatory factors
- eukaryotic regulatory sequences
- promoter analysis
- ChIP-chip assay
- chromatin immunoprecipitation microarray data
- human promoter analysis
- mouse promoter analysis
- rat promoter analysis
Literature & Tutorials:
This record last updated: 01-17-2006