dbPTM -- an information repository of protein post-translational modification
What you can do:
Search for information on protein post-translational modifications (PTMs).
Highlights:
- dbPTM is a database that compiles information on protein post-translational modifications (PTMs), such as the catalytic sites, solvent accessibility of amino acid residues, protein secondary and tertiary structures, protein domains and protein variations.
- The database includes all of the experimentally validated PTM sites from Swiss-Prot, PhosphoELM and O-GLYCBASE. Only a small fraction of Swiss-Prot proteins are annotated with experimentally verified PTM.
- The dbPTM systematically identifies three major types of protein PTM (phosphorylation, glycosylation and sulfation) sites against Swiss-Prot proteins by refining our previously developed prediction tool, KinasePhos (http://kinasephos.mbc.nctu.edu.tw/). Solvent accessibility and secondary structure of residues are also computationally predicted and are mapped to the PTM sites.
Keywords:
- protein post-translational modifications
- protein posttranslational modifications
- protein catalytic sites
- protein phosphorylation
- protein glycosylation
- protein sulfation
- protein lipidation
- protein acetylation
- protein amidation
- protein methylation
- protein hydroxylation
- protein trimethylation
- protein formylation
- protein deamidation
- protein citrullination
- protein structures
- protein domain variations
- protein variants
- post-translational modification site prediction
Literature & Tutorials:
This record last updated: 02-20-2006