CAGE Basic/Analysis Databases -- the CAGE resource for comprehensive promoter analysis

What you can do:
Search for comprehensive Cap-analysis gene expression (CAGE) Basic data and Analysis results.
Highlights:
  • Cap-analysis gene expression (CAGE) Basic and Analysis Databases store an original resource produced by CAGE, which measures expression levels of transcription starting sites by sequencing large amounts of transcript 5' ends, termed CAGE tags.
  • Millions of human and mouse high-quality CAGE tags derived from different conditions in >20 tissues consisting of >250 RNA samples are essential for identification of novel promoters and promoter characterization in the aspect of expression profile.
  • CAGE Basic Database is a primary database of the CAGE resource, RNA samples, CAGE libraries, CAGE clone and tag sequences and so on.
  • CAGE Analysis Database stores promoter related information, such as counts of related transcripts, CpG islands and conserved genome region. It also provides expression profiles at base pair and promoter levels.
  • Both databases are based on the same framework, CAGE tag starting sites, tag clusters for defining promoters and transcriptional units (TUs).
  • Their associations and TU attributes are available to find promoters of interest.
Keywords:
  • human transcriptome analysis
  • mouse transcriptome analysis
  • transcription starting sites
  • human promoter analysis
  • mouse promoter analysis
  • CAGE libraries
  • CAGE clones
  • CAGE tags
  • CpG islands
  • Cap-analysis gene expression
  • global gene expression analysis
This record last updated: 02-20-2006

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