SpliceDB -- database of canonical and non-canonical mammalian splice sites
What you can do:
Search for known mammalian splice site sequences and other related information.
Highlights:
- A set of 43337 splice junction pairs was extracted from mammalian GenBank annotated genes. 22489 of them are supported by EST sequences. 98.71% of those contain canonical dinucleotides GT and AG for donor and acceptor sites, respectively. 0.56% hold non-canonical GC-AG splice site pairs. The reminder 0.73% occurs in a lot of small groups (with maximum size of 0.05%).
- The information about verified splice site sequences for canonical and non-canonical sites is presented in SpliceDB with the supporting evidence.
Keywords:
- mammalian splice sites
- mammalian gene splicing
- non-canonical splice sites
- canonical splice sites
- mammalian introns
- mammalian exons
- mammalian gene structures
Literature & Tutorials:
This record last updated: 06-14-2006