ExtraTrain -- A database of Extragenic regions and transcriptional regulators in bacteria and archaea
What you can do:
Search for extragenic regions in over 230 bacterial and Archaeal genomes.
Highlights:
- ExtraTrain provides integrated and easily manageable information for 679816 extragenic regions and for the genes delimiting each of them.
- In addition ExtraTrain supplies a tool to explore extragenic regions, named Palinsight, oriented to detect and search palindromic patterns. It allows the search for regulatory signals in user defined sets of extragenic regions.
- The 26046 regulatory proteins included in ExtraTrain belong to the families AraC/XylS, ArsR, AsnC, Cold shock domain, CRP-FNR, DeoR, GntR, IclR, LacI, LuxR, LysR, MarR, MerR, NtrC/Fis, OmpR and TetR.
Keywords:
- bacterial Extragenic regions
- archeal Extragenic regions
- bacterial transcription factors
- archeal transcription factors
- prokaryotic Extragenic regions
- prokaryotic transcription factor binding sites
- prokaryotic regulatory sequences
Literature & Tutorials:
This record last updated: 06-14-2006