Multiple sequence alignment of prokaryotic 16S rDNA

URL:
http://greengenes.lbl.gov/cgi-bin/nph-NAST_align.cgi
What you can do:
Examine the comprehensive database of 16S rDNA prokaryotic multiple sequence alignment.
Highlights:
  • This database provides a current and comprehensive 16S rDNA prokaryotic multiple sequence alignment (prokMSA) for browsing, blasting, probing, and downloading.
  • The data and tools presented by CASCADE-P can assist the researcher in choosing phylogenetically specific probes, as well as PCR primers.
Keywords:
  • 16s rRNA sequence analysis
  • 16s rRNA sequence alignment
  • 16s rRNA probe design tool
  • 16s rRNA PCR primer design tool
  • Ribosomal RNA sequence analysis
Literature & Tutorials:
PubMed Link: Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
This record last updated: 06-15-2006
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