FISH x97 family identification of sequence homologues using structure anchored hidden Markov models
What you can do:
Identify homologous protein domain sequences.
Highlights:
- The FISH server is highly accurate in identifying the family membership of domains in a query protein sequence, even in the case of very low sequence identities to known homologues.
- Matches to a query sequence provide the user not only with an annotation of the identified domains and hence a hint to their function, but also with probable 2D and 3D structures, as well as with pairwise and multiple sequence alignments to homologues with low sequence identity.
- In addition, the FISH server allows users to upload and search their own protein sequence collection or to quarry public protein sequence data bases with individual saHMMs.
Keywords:
- protein sequence analysis tool
- protein domain analysis tool
- protein sequence similarity analysis tool
- homologous structural domains
- pairwise protein sequence alignment tool
- remote protein sequence alignment tool
Literature & Tutorials:
This record last updated: 07-17-2006