pTARGET -- a web server for predicting protein subcellular localization
What you can do:
Prediction protein subcellular localization in eukaryotic non-plant species.
Highlights:
- The pTARGET web server enables prediction of nine distinct protein subcellular localizations in eukaryotic non-plant species.
- The prediction algorithm is primarily based on the occurrence patterns of location-specific protein functional domains in nine different subcellular locations, including cytoplasm, endoplasmic reticulum, extracellular/secreted, Golgi, lysosomes, mitochondria, nucleus, peroxysomes and plasma membrane.
- Queries can be made by entering protein sequences or by uploading a file containing up to 5000 protein sequences in FASTA format.
- Prediction results for queries with matching entries in the PreCalcDB, a relational database containing pre-computed prediction results for all eukaryotic non-plant protein sequences in the public domain that includes about 770 000 entries, will be retrieved instantly; while for the missing ones new predictions will be computed and sent by email.
- Pre-computed predictions can also be downloaded for complete proteomes of Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila, Mus musculus and Homo sapiens.
Keywords:
- protein subcellular localizations
- eukaryotic protein localization prediction tool
- protein annotations
- proteome annotation
Literature & Tutorials:
PubMed Link: pTARGET -- a web server for predicting protein subcellular localization
PubMed Link of the original article: pTARGET [corrected] a new method for predicting protein subcellular localization in eukaryotes
PubMed Link of the original article: pTARGET [corrected] a new method for predicting protein subcellular localization in eukaryotes
This record last updated: 04-17-2014