Protemot -- prediction of protein binding sites with automatically extracted geometrical templates
What you can do:
Predict protein binding sites in a protein sequence based on geometrical analysis of protein tertiary substructures.
Highlights:
- Protemot web server carries out prediction of protein binding sites based on the structural templates automatically extracted from the crystal structures of protein-ligand complexes in the PDB (Protein Data Bank).
- In its 2006 release, 1051 distinctive templates of protein binding sites have been identified from 5146 protein-ligand complex crystal structures.
- Experimental results show that Protemot can deliver a superior prediction power than a web server based on a manually curated template library with insufficient quantity of entries.
Keywords:
- protein binding site prediction tool
- protein functional site prediction tool
- protein-ligand binding
Literature & Tutorials:
This record last updated: 07-25-2006