CorreLogo -- an online server for 3D sequence logos of RNA and DNA alignments

URL:
http://schneider.ncifcrf.gov/papers/correlogo/
What you can do:
Generate a three-dimensional representation for a given RNA or DNA sequence alignment.
Highlights:
  • This web server generates a 3D representation of properties of user-submitted RNA or DNA alignments.
  • The visualized properties are information of single alignment columns, mutual information of two alignment positions as well as the position-specific fraction of gaps.
  • The nucleotide composition of both single columns and column pairs is visualized with the help of color-coded 3D bars labeled with letters.
  • The server generates both VRML and JVX output that can be viewed with a VRML viewer or the JavaView applet, respectively.
Keywords:
  • RNA sequence alignment visualization tool
  • DNA sequence alignment visualization tool
Literature & Tutorials:
PubMed Link: CorreLogo -- an online server for 3D sequence logos of RNA and DNA alignments
This record last updated: 04-21-2014
Report a missing or misdirected URL.

The Health Sciences Library System supports the Health Sciences at the University of Pittsburgh.

© 1996 - 2023 Health Sciences Library System, University of Pittsburgh. All rights reserved.