Predict multiple potential binding sites of miRNAs in large target RNAs.
Highlights:
RNAhybrid is a tool for finding the minimum free energy hybridization of a long and a short RNA, and thus effectively predict microRNA (miRNA) targets.
The 2006 release disallows G:U base pairs in the seed region, and a seed-match speed-up, which accelerates the program by a factor of 8.