VOMBAT -- prediction of transcription factor binding sites using variable order Bayesian trees
What you can do:
Predict transcription factor binding sites using variable order Bayesian trees.
Highlights:
- This web server recognizes DNA binding sites based on variable order Markov models and variable order Bayesian trees.
- It offers following functionality:
- (i) given datasets with annotated binding sites and genomic background sequences, variable order Markov models and variable order Bayesian trees can be trained;
- (ii) given a set of trained models, putative DNA binding sites can be predicted in a given set of genomic sequences and
- (iii) given a dataset with annotated binding sites and a dataset with genomic background sequences, cross-validation experiments for different model combinations with different parameter settings can be performed.
Keywords:
- transcription factor binding site prediction tool
- cis-regulatory elements prediction tool
- gene regulatory element identification tool
- promoter analysis
Literature & Tutorials:
This record last updated: 08-02-2006