VOMBAT -- prediction of transcription factor binding sites using variable order Bayesian trees

What you can do:
Predict transcription factor binding sites using variable order Bayesian trees.
Highlights:
  • This web server recognizes DNA binding sites based on variable order Markov models and variable order Bayesian trees.
  • It offers following functionality:
  • (i) given datasets with annotated binding sites and genomic background sequences, variable order Markov models and variable order Bayesian trees can be trained;
  • (ii) given a set of trained models, putative DNA binding sites can be predicted in a given set of genomic sequences and
  • (iii) given a dataset with annotated binding sites and a dataset with genomic background sequences, cross-validation experiments for different model combinations with different parameter settings can be performed.
Keywords:
  • transcription factor binding site prediction tool
  • cis-regulatory elements prediction tool
  • gene regulatory element identification tool
  • promoter analysis
This record last updated: 08-02-2006
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