POXO -- a web-enabled tool series to discover transcription factor binding sites

What you can do:
Discover transcription factor binding sites from co-expressed genes.
Highlights:
  • POXO is a comprehensive tool series to discover transcription factor binding sites from co-expressed genes.
  • POXO manages tasks such as functional evaluation and grouping of genes, sequence retrieval, pattern discovery and pattern verification.
  • POXO begins by examining the biological functions that a set of co-expressed genes are involved in, it then discovers over-represented nucleotide patterns from the upstream sequences of the selected gene sets.
  • This enables to investigate the possibility that the genes are co-regulated by common cis-elements.
Keywords:
  • transcription factor binding site prediction tool
  • cis-regulatory elements prediction tool
  • gene regulatory element identification tool
  • promoter analysis
  • co-regulated genes
  • co-expressed genes
This record last updated: 08-02-2006
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