POXO -- a web-enabled tool series to discover transcription factor binding sites
What you can do:
Discover transcription factor binding sites from co-expressed genes.
Highlights:
- POXO is a comprehensive tool series to discover transcription factor binding sites from co-expressed genes.
- POXO manages tasks such as functional evaluation and grouping of genes, sequence retrieval, pattern discovery and pattern verification.
- POXO begins by examining the biological functions that a set of co-expressed genes are involved in, it then discovers over-represented nucleotide patterns from the upstream sequences of the selected gene sets.
- This enables to investigate the possibility that the genes are co-regulated by common cis-elements.
Keywords:
- transcription factor binding site prediction tool
- cis-regulatory elements prediction tool
- gene regulatory element identification tool
- promoter analysis
- co-regulated genes
- co-expressed genes
Literature & Tutorials:
This record last updated: 08-02-2006