jPREdictor -- a versatile tool for the prediction of cis-regulatory elements
What you can do:
Predict cis-regulatory elements based on short motifs (protein bindings sites on DNA).
Highlights:
- jPREdictor is designed for the fast and versatile prediction of cis-regulatory elements on a genome-wide scale.
- The prediction is based on clusters of individual motifs (protein binding sites on the DNA) and any combination of these into multi-motifs with selectable minimal and maximal distances.
- Cluster scores are weighted occurrences of multi-motifs, where the weights are derived from positive and negative training sets.
Keywords:
- transcription factor binding site prediction tool
- cis-regulatory elements prediction tool
- gene regulatory element identification tool
- promoter sequences analysis
Literature & Tutorials:
This record last updated: 08-02-2006