Stubb -- a program for discovery and analysis of cis-regulatory modules
What you can do:
Find significant clusters of transcription factor binding sites over long genomic sequences.
Highlights:
- Stubb program uses a probabilistic model and a maximum likelihood approach to efficiently detect cis-regulatory modules over genomic scales.
- It may optionally exploit a second related genome to improve module prediction accuracy.
- The interface is equipped with a special post-processing step for in-depth analysis of specific modules, in order to reveal individual binding sites predicted in the module.
Keywords:
- transcription factor binding site analysis tool
- cis-regulatory element prediction tool
- cis-regulatory modules detection tool
- gene regulatory elements
Literature & Tutorials:
This record last updated: 08-02-2006