H-DBAS -- Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
What you can do:
Search for annotated information on alternatively spliced human transcripts.
Highlights:
- H-DBAS is a specialized database for human alternative splicing (AS) based on H-Invitational full-length cDNAs.
- For better annotations of AS events, RNA-Seq tag information was correlated to the AS exons and splice junctions.
- 148,376,598 RNA-Seq tags were gemerated from RNAs extracted from cytoplasmic, nuclear and polysome fractions.
- Analysis of the RNA-Seq tags identified 90,900 exons that are very likely to be used for protein synthesis.
- 254 AS junctions of human RefSeq transcripts are unique to nuclear RNA and may not have any translational consequences.
- A new comparative genomics viewer is available so users can empirically understand the evolutionary turnover of AS.
Keywords:
- human alternative gene splicing
- Human AS variants
- Human gene structures
- Human gene introns
- Human gene exons
- Human mRNA splicing
- Human transcriptome
Literature & Tutorials:
This record last updated: 01-13-2010