SwissRegulon -- a database of genome-wide annotations of regulatory sites
What you can do:
Search for genome-wide annotations of regulatory sites in yeast and prokaryotes genomes.
Highlights:
- This database contains genome-wide annotations of regulatory sites in the intergenic regions of genomes.
- The annotations are produced using a number of recently developed PhyloGibbs algorithms that operate on multiple alignments of orthologous intergenic regions from related genomes in combination with, whenever available, known sites from the literature, and ChIP-on-chip binding data.
- It provides information about the sequence, location, orientation, posterior probability and, whenever available, binding factor of each annotated site.
- This database can be queried based on any annotated genomic feature and for regulons.
Keywords:
- transcription factor binding site prediction tool
- transcription factor binding site analysis tool
- DNA-binding sites prediction tool
- cis-elements prediction tool
- cis-regulatory elements prediction tool
- promoter analysis tool
- genome wide cis-elements prediction tool
- transcription factors
- yeast transcription factor binding sites
- Saccharomyces cerevisiae TF
- bacterial transcription factor binding sites
- regulon
- prokaryotic transcription factor binding sites
Literature & Tutorials:
This record last updated: 03-21-2007