SNAPPI-DB -- a database and API of Structures, iNterfaces and Alignments for Proteinx96Protein Interactions
What you can do:
Search for information on structures,interfaces and alignment of protein-protein interactions.
Highlights:
- SNAPPI-DB contains structural data, down to the level of atom co-ordinates, for each structure in the Protein Data Bank (PDB) together with associated data including SCOP, CATH, Pfam, SWISSPROT, InterPro, GO terms, Protein Quaternary Structures (PQS) and secondary structure information.
- Domain-domain interactions are stored for multiple domain definitions and are classified by their Superfamily/Family pair and interaction interface.
- Each set of classified domain-domain interactions has an associated multiple structure alignment for each partner.
- The API facilitates data access via PDB entries, domains and domain-domain interactions.
- SNAPPI-DB contains many features which are not available in other databases of structural protein-protein interactions.
Keywords:
- protein domain-domain interactions
- protein-protein interactions
- protein-protein complex structure
- protein-protein interface
- protein structural alignment
- multiple structure alignment
- 3D protein structures.
- protein domain-domain structures
- protein domain structures
Literature & Tutorials:
This record last updated: 03-21-2007