MamPol -- a database of nucleotide polymorphism in the Mammalia class
What you can do:
Conduct single nucleotide polymorphisms diversity measurements among homologous sequences from the Mammalia class.
Highlights:
- MamPol, 'Mammalia Polymorphism Database', is a website containing all the well-annotated polymorphic sequences available in GenBank for the Mammalia class grouped by name of organism and gene.
- Diversity measures of single nucleotide polymorphisms are provided for each set of haplotypic homologous sequences, including polymorphism at synonymous and non-synonymous sites, linkage disequilibrium and codon bias.
- The MamPol website includes several interfaces for browsing the contents of the database and making customizable comparative searches of different species or taxonomic groups.
- It also contains a set of tools for simple re-analysis of the available data and a statistics section that is updated daily and summarizes the contents of the database.
- Data gathering, calculation of diversity measures and daily updates are automatically performed using PDA software.
Keywords:
- nucleotide diversity
- mammalian polymorphic sequences
- mammalian SNPs
- mammalian single nucleotide polymorphisms
- mammalian codon usage
- mammalian linkage disequilibrium
Literature & Tutorials:
This record last updated: 03-22-2007