CSRDB -- a small RNA integrated database and browser resource for cereals
What you can do:
Search for sequence information on rice, maize and other cereal crops small RNAs.
Highlights:
- CSRDB consists of large-scale datasets of maize and rice smRNA sequences generated by high-throughput pyrosequencing.
- The smRNA sequences have been mapped to the rice genome and to the available maize genome sequence and these results are presented in two genome browser datasets using the Generic Genome Browser.
- Potential RNA targets for the smRNAs have been predicted and access to the resulting smRNA/RNA target pair dataset has been made available through a MySQL based relational database.
Keywords:
- cereal small RNAs smRNAs
- cereal microRNAs miRNAs
- cereal short interfering RNAs siRNAs
- cereal trans-acting siRNAs ta-siRNAs
- rice small RNA
- Oryza sativa smRNAs
- corn maize small RNA
- epigenetic processes
- plant small RNAs
- cereal crops
- smRNA targets
- RNA interference
Literature & Tutorials:
This record last updated: 03-26-2007