POGs/PlantRBP -- a resource for comparative genomics in plants

What you can do:
Search for information on putative orthologous proteins among rice, maize and Arabidopsis with emphasis on RNA-binding proteins.
Highlights:
  • POGs/PlantRBP is a relational database that integrates data from rice, Arabidopsis, and maize by placing the complete Arabidopsis and rice proteomes and available maize sequences into 'putative orthologous groups' (POGs).
  • Each POG entry includes orthologs in Arabidopsis and rice, annotated with domain organization, gene models, phylogenetic trees, and multiple intracellular targeting predictions.
  • A graphical display maps maize sequences on to their most similar rice gene model.
  • The database can be queried using any combination of gene name, accession, domain, and predicted intracellular location, or using BLAST.
  • Useful features of the database include the ability to search for proteins with both a specified domain content and intracellular location, the concurrent display of mutual best hits and phylogenetic trees which facilitates evaluation of POG assignments, the association of maize sequences with POGs, and the display of targeting predictions and domain organization for all POG members, which reveals consistency, or lack thereof, of those predictions.
Keywords:
  • comparative plant proteomics
  • plant proteomes
  • plant RNA binding proteins
  • RNA binding domains
  • plant gene models
  • plant phylogenetic analysis
This record last updated: 04-21-2014
Report a missing or misdirected URL.

The Health Sciences Library System supports the Health Sciences at the University of Pittsburgh.

© 1996 - 2023 Health Sciences Library System, University of Pittsburgh. All rights reserved.