SplicePort -- an interactive splice-site analysis tool
What you can do:
A web-based tool for splice-site analysis.
Highlights:
- Allows the user to make splice-site predictions for submitted sequences.
- In addition, the user can also browse the rich catalog of features that underlies these predictions, and which we have found capable of providing high classification accuracy on human splice sites.
- Feature selection is optimized for human splice sites, but the selected features are likely to be predictive for other mammals as well.
- With our interactive feature browsing and visualization tool, the user can view and explore subsets of features used in splice-site prediction (either the features that account for the classification of a specific input sequence or the complete collection of features).
- Selected feature sets can be searched, ranked or displayed easily.
- The user can group features into clusters and frequency plot WebLogos can be generated for each cluster.
- The user can browse the identified clusters and their contributing elements, looking for new interesting signals, or can validate previously observed signals.
Keywords:
- Base Sequence
- Chromosome Mapping
- DNA
- Genome
- Molecular Sequence Data
- Automated Pattern Recognition
- RNA Splice Sites/
- Sequence Alignment
- Sequence Analysis
- alternative splicing
- splicing
Literature & Tutorials:
PubMed Link: SplicePort--an interactive splice-site analysis tool
This record last updated: 05-30-2008