taveRNA -- a web suite for RNA algorithms and applications

What you can do:
Web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA.
Highlights:
  • taveRNA is a web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA.
  • alteRNA is a new alternative for RNA secondary structure prediction. It is based on a dynamic programming solution that minimizes the sum of energy density and free energy of an RNA structure.
  • inteRNA is the first RNA-RNA interaction structure prediction web service. It also employs a dynamic programming algorithm to minimize the free energy of the resulting joint structure of the two interacting RNAs.
  • Lastly, pRuNA is an efficient database pruning service; which given a query RNA, eliminates a significant portion of an ncRNA database and returns only a few ncRNAs as potential regulators.
Keywords:
  • Nucleic Acid Conformation
  • RNA
  • Sequence Alignment
  • Sequence Analysis
  • RNA algorithm
  • RNA secondary structure prediction
  • RNA structure
  • interacting RNA
  • ncRNA
Literature & Tutorials:
This record last updated: 06-04-2008
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