DBAli -- A Database of Structure Alignments

What you can do:
Mine the protein structure space.
  • The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB).
  • These tools include (i) the DBAlit program that allows users to input the 3D coordinates of a protein structure for comparison by MAMMOTH against all chains in the PDB; (ii) the AnnoLite and AnnoLyze programs that annotate a target structure based on its stored relationships to other structures; (iii) the ModClus program that clusters structures by sequence and structure similarities; (iv) the ModDom program that identifies domains as recurrent structural fragments and (v) an implementation of the COMPARER method in the SALIGN command in MODELLER that creates a multiple structure alignment for a set of related protein structures.
  • Thus, the DBAli tools allow users to mine the protein structure space by establishing relationships between protein structures and their functions.
  • Molecular Sequence Data
  • Protein Conformation
  • Sequence Alignment
  • Sequence Analysis
  • Sequence Homology
  • Structure-Activity Relationship
  • protein structure
  • structural alignment
Literature & Tutorials:
This record last updated: 06-04-2008
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