SAGExplore -- a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation
What you can do:
Map experimental tags in serial analysis of gene expression.
Highlights:
- The core of the server relies on a database of genomic virtual tags built by a recently described method that attempts to reduce the amount of ambiguous assignments for those tags that are not unique in the genome.
- The method provides a complete annotation of potential virtual SAGE tags within a genome, along with an estimation of their confidence for experimental observation that ranks tags that present multiple matches in the genome.
- The output of the server consists of a table in HTML format that contains links to a graphic representation of the results and to some external servers and databases, facilitating the tasks of analysis of gene expression and gene discovery.
- Also, a table in tab delimited text format is produced, allowing the user to export the results into custom databases and software for further analysis.
- The current server version provides the most accurate and complete SAGE tag mapping source that is available for the yeast organism.
- In the near future, this server will also allow the accurate mapping of experimental SAGE-tags from other model organisms such as human, mouse, frog and fly.
Keywords:
- Chromosome Mapping
- Expressed Sequence Tags
- Gene Expression Regulation
- Sequence Tagged Sites
- SAGE
- serial analysis gene expression
- tag mapping
- virtual tags
Literature & Tutorials:
This record last updated: 04-17-2014