Berkeley Phylogenomics Group

URL:
http://phylogenomics.berkeley.edu/
What you can do:
Resources for structural phylogenomic analysis.
Highlights:
  • The Berkeley Phylogenomics Group provides a series of web servers for phylogenomic analysis: classification of sequences to pre-computed families and subfamilies using the PhyloFacts Phylogenomic Encyclopedia, FlowerPower clustering of proteins sharing the same domain architecture, MUSCLE multiple sequence alignment, SATCHMO simultaneous alignment and tree construction and SCI-PHY subfamily identification.
  • The PhyloBuilder web server provides an integrated phylogenomic pipeline starting with a user-supplied protein sequence, proceeding to homolog identification, multiple alignment, phylogenetic tree construction, subfamily identification and structure prediction.
Keywords:
  • Phylogeny
  • Protein Conformation
  • Sequence Alignment
  • Sequence Analysis
  • phylogenomic analysis
  • multiple sequence alignment
  • simultaneous alignment
  • tree construction
  • subfamily identification
  • phylogenetic tree
  • structure prediction
Literature & Tutorials:
PubMed Link: Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
This record last updated: 06-05-2008
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