PROMALS3D -- web server for accurate multiple protein sequence and structure alignments
What you can do:
Construct alignments for multiple protein sequences and/or structures using information from sequence database searches, secondary structure prediction, available homologs with 3D structures and user-defined constraints.
Highlights:
- PROMALS3D shows higher alignment accuracy than a number of other advanced methods.
- Input of PROMALS3D web server can be FASTA format protein sequences, PDB format protein structures and/or user-defined alignment constraints.
- The output page provides alignments with several formats, including a colored alignment augmented with useful information about sequence grouping, predicted secondary structures and consensus sequences.
- Intermediate results of sequence and structural database searches are also available.
Keywords:
- protein sequence alignment
- protein secondary structure prediction
- protein multiple alignment
- protein structure alignment
Literature & Tutorials:
This record last updated: 07-16-2008