PROMALS3D -- web server for accurate multiple protein sequence and structure alignments

What you can do:
Construct alignments for multiple protein sequences and/or structures using information from sequence database searches, secondary structure prediction, available homologs with 3D structures and user-defined constraints.
  • PROMALS3D shows higher alignment accuracy than a number of other advanced methods.
  • Input of PROMALS3D web server can be FASTA format protein sequences, PDB format protein structures and/or user-defined alignment constraints.
  • The output page provides alignments with several formats, including a colored alignment augmented with useful information about sequence grouping, predicted secondary structures and consensus sequences.
  • Intermediate results of sequence and structural database searches are also available.
  • protein sequence alignment
  • protein secondary structure prediction
  • protein multiple alignment
  • protein structure alignment
This record last updated: 07-16-2008
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