GeneCAT -- gene co-expression analysis toolbox

URL:
http://genecat.mpg.de
What you can do:
Novel webtools that combine BLAST and co-expression analyses.
Highlights:
  • GeneCAT introduces several novel microarray data analyzing tools.
  • First, the multigene co-expression analysis, combined with co-expressed gene networks, provides a more powerful data mining technique than standard, single-gene co-expression analysis.
  • Second, the high-throughput Map-O-Matic tool matches co-expression pattern of multiple query genes to genes present in user-defined subdatabases, and can therefore be used for gene mapping in forward genetic screens.
  • Third, Rosetta combines co-expression analysis with BLAST and can be used to find 'true' gene orthologs in the plant model organisms Arabidopsis thaliana and Hordeum vulgare (Barley).
  • GeneCAT is equipped with expression data for the model plant A. thaliana, and first to introduce co-expression mining tools for the monocot Barley.
Keywords:
  • co-expression analysis
  • A. thaliana
  • Barley
  • microarray data analysis
  • Arabidopsis thaliana
  • Hordeum vulgare
  • expression data
Literature & Tutorials:
PubMed Link: GeneCAT--novel webtools that combine BLAST and co-expression analyses
This record last updated: 07-28-2008
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