E3Miner -- a text mining tool for ubiquitin-protein ligases
What you can do:
Integrates available E3 data not only from the published literature but also from the biological databases, using natural language processing techniques.
Highlights:
- E3Miner is a web-based text mining tool that extracts and organizes comprehensive knowledge about E3s from the abstracts of journal articles and the relevant databases, supporting users to have a good grasp of E3s and their related information easily from the available text.
- The tool analyzes text sentences to identify protein names for E3s, to narrow down target substrates and other ubiquitin-transferring proteins in E3-specific ubiquitination pathways and to extract molecular features of E3s during ubiquitination.
- E3Miner also retrieves E3 data about protein functions, other E3-interacting partners and E3-related human diseases from the protein databases, in order to help facilitate further investigation.
Keywords:
- natural language processing
- NLP
- literature searching
- text mining
- biomedical text mining
- ubiquitin
- ligase
- E3
- ubiquitination
- ubiquitin-protein ligase
Literature & Tutorials:
This record last updated: 07-29-2008