MOPAT -- motif pair tree
What you can do:
A graph-based method to predict recurrent cis-regulatory modules from known motifs.
Highlights:
- MOPAT identifies cis-regulatory modules (CRMs) through the identification of motif modules, groups of motifs co-occurring in multiple CRMs.
- It can identify 'orthologous' CRMs without multiple alignments.
- It can also find CRMs given a large number of known motifs.
Keywords:
- Binding Sites
- Gene Expression Profiling
- Oligonucleotide Array Sequence Analysis
- Transcriptional Regulatory Elements
- DNA Sequence Analysis
- cis-regulatory modules
- CRMs
Literature & Tutorials:
This record last updated: 08-13-2008