SOAP -- short oligonucleotide alignment program

What you can do:
A program for efficient gapped and ungapped alignment of short oligonucleotides onto reference sequences.
Highlights:
  • The program is designed to handle the huge amounts of short reads generated by parallel sequencing using the new generation Illumina-Solexa sequencing technology.
  • SOAP is compatible with numerous applications, including single-read or pair-end resequencing, small RNA discovery and mRNA tag sequence mapping.
  • SOAP is a command-driven program, which supports multi-threaded parallel computing, and has a batch module for multiple query sets.
Keywords:
  • oligonucleotide
  • sequence alignment
Literature & Tutorials:
This record last updated: 12-11-2008
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