JAIL -- Just Another Interface Library
What you can do:
Find information about macromolecule interfaces and molecule recognition.
Highlights:
- JAIL annotates three different kinds of macromolecular interfaces, those between interacting protein domains, interfaces of different protein chains and interfaces between proteins and nucleic acids.
- This database contains about 184,000 entries.
- All the interfaces can easily be identified by a detailed search form or by a hierarchical tree that describes the protein domain architectures classified by the SCOP database.
- Visual inspection of the interfaces is possible via an interactive protein viewer. Furthermore, large scale analyses are supported by an implemented sequential and by a structural clustering.
- Similar interfaces as well as non-redundant interfaces can be picked out.
- The sequential conservation of binding sites was also included in the database and is retrievable via Jmol.
- A comprehensive download section allows the composition of representative data sets with user defined parameters.
- The data set in combination with various search options allow a comprehensive view on all interfaces between macromolecules included in the Protein Data Bank (PDB).
Keywords:
- protein interactions
- molecule recognition
- macromolecule interface
- protein interface
- ligand interface
- ligand
- protein-protein docking
Literature & Tutorials:
This record last updated: 02-25-2009