d-Omix: a mixer of generic protein domain analysis tools
What you can do:
Find information about protein domains in protein function, interaction and evolution.
Highlights:
- d-Omix is a unified platform to analyze, compare and visualize protein data sets in various aspects of protein domain combinations.
- With InterProScan files for protein sets of interest provided by users, the server incorporates four services for domain analyses.
- It constructs protein phylogenetic tree based on a distance matrix calculated from protein domain architectures (DAs), allowing the comparison with a sequence-based tree.
- It calculates and visualizes the versatility, abundance and co-presence of protein domains via a domain graph.
- It compares the similarity of proteins based on DA alignment.
- It builds a putative protein network derived from domain-domain interactions from DOMINE.
- Users may select a variety of input data files and flexibly choose domain search tools (e.g. hmmpfam, superfamily) for a specific analysis. Results from the d-Omix can be exported into various formats such as SVG, JPG, BMP and CSV.
- Users with only protein sequences can prepare an InterProScan file using a service provided by the server as well.
Keywords:
- protein domain
- domain-domain interaction
- protein domain analysis
Literature & Tutorials:
This record last updated: 08-20-2009